PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144439.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 205aa    MW: 22736.5 Da    PI: 10.0668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-055576223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cgk F ++  L  H++ H
  XP_009144439.1 55 ECQYCGKEFANSQALGGHQNAH 76
                    7******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.45E-65281No hitNo description
Gene3DG3DSA:3.30.160.603.5E-55280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8015481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSRTGESSSG SSSDRTIKLF GFELISGGRS PEVTTADSVS SSTKNTTSFI AKRLECQYCG  60
KEFANSQALG GHQNAHKKER LKKKRLQLQA RRASIGYYLT SHHQPITTSF QRPYKTPSYC  120
AFSSMHVNNQ MGLFNDEWSP ISSQISFGNK DMSQDIIEQN GEMGKVYPGV RQNMIQFQRD  180
LTSPSGPKRS IKSLDLHLGI AGDTV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.302900.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144439.11e-153PREDICTED: zinc finger protein 5
RefseqXP_013655353.11e-153PREDICTED: zinc finger protein 5-like
SwissprotQ392643e-98ZFP5_ARATH; Zinc finger protein 5
TrEMBLA0A078G6661e-153A0A078G666_BRANA; BnaA08g25740D protein
TrEMBLM4DPJ71e-153M4DPJ7_BRARP; Uncharacterized protein
STRINGBra018438.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-92zinc finger protein 5